PROGRAM INFORMATION

KEYNOTE SPEAKERS

CONTRIBUTED PAPERS

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KEYNOTE SPEAKERS

	Francesca Ciccarelli (European Institute of Oncology) Gene Structure Modifications in Primate-Specific Duplicates
	Michael B. Eisen (University of California, Berkeley)
	Matthew Hahn (Indiana University) Quantifying Gene Gain and Loss in Mammals
	Katherine S. Pollard (University of California, Davis) Accelerated and Biased Nucleotide Evolution in the Human Genome
	Oliver A. Ryder (Zoological Society of San Diego) Genomics and Bioinformatics: Applications to Conservation Efforts for Endagered Species
	Barbara J. Trask (Fred Hutchinson Cancer Research Center) Dynamic Duplications in the Human Genome
	Ajit Varki (University of California, San Diego) Multiple Genetic Differences in Sialic Acid Biology between Humans and Great Apes

CONTRIBUTED PAPERS

(The author presenting the paper is indicated in bold.)

Max Alekseyev, Multi-Break Rearrangements: from Circular to Linear Genomes

Sébastien Angibaud, Guillaume Fertin, Irena Rusu, Annelyse Thevenin, Stéphane Vialette, A Pseudo-Boolean Programming Approach for Computing the Breakpoint Distance between Two Genomes with Duplicate Genes

William Arndt, Jijun Tang, Improving Inversion Median Computation using Commuting Reversals and Cycle Information

Cedric Chauve, Jean-Philippe Doyon, Nadia El-Mabrouk, Inferring a Duplication, Speciation and Loss History from a Gene Tree

Simon Gog, Martin Bader, How to Achieve an Equivalent Simple Permutation in Linear Time

Daniel Goodman, Noah Ollikainen, Chris Sholley, Baculovirus Phylogeny Based on Genome Rearrangements

Yuhong Guo, Dale Schuurmans, Learning Gene Regulatory Networks via Globally Regularized Risk Minimization

Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk, Evolution of Tandemly Arrayed Genes in Multiple Species

Guoliang Li, Jian Ma, Louxin Zhang, Selecting Genomes for Reconstruction of Ancestral Genomes

Jian Ma, Aakrosh Ratan, Louxin Zhang, Webb Miller, David Haussler, A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications

Ai Xia, Maria V. Sharakhova, Igor Sharakhov, Reconstructing an Inversion History in the Anopheles gambiae Complex

Hao Zhao, Guillaume Bourque, Recovering True Rearrangement Events on Phylogenetic Trees

Chunfang Zheng, Qian Zhu, David Sankoff, Parts of the Problem of Polyploids in Rearrangement Phylogeny

Jie Zheng, Igor Rogozin, Eugene Koonin, Teresa Przytycka, A Rigorous Analysis of the Pattern of Intron Conservation Supports the Coelomata Clade of Animals